Solanum lycopersicum — Genome Assembly Pipeline
QC: PASS
Step 5/5 · 100% complete✓ All complete
Pipeline Steps
✓
FastQC + NanoPlot QC
complete
Duration18m 42s
Illumina Q3095.1%
PacBio mean length8,421 bp
PacBio N5012,340 bp
✓
Trimmomatic + Filtlong
complete
Duration11m 08s
Illumina surviving97.8%
PacBio reads kept98.2%
Avg Illumina length148 bp
✓
SPAdes 3.15 Assembly
complete
Duration4h 32m
Contigs3,400
N509.2 Mb
Total length812 Mbp
GC%34.9
✓
Pilon Polishing (×3)
complete
Duration1h 15m
SNP corrections12,481
Indel corrections3,214
Final N509.2 Mb
✓
BUSCO v5 (embryophyta)
complete
Duration22m 33s
Complete BUSCOs98.6%
Fragmented0.8%
Missing0.6%
DBembryophyta_odb10
Pipeline Summary
Steps5/5 complete
TypeAssembly
SPAdes 3.15 + Pilon polishing. 120× Illumina + 40× PacBio CLR. 3,400 contigs, N50 9.2 Mb, completeness 98.6% (BUSCO embryophyta_odb10). Reference: SL4.0 validation.