CNB-CSIC PILOT · 2026

Scientific data,
unified.

One platform for CNB-CSIC research — protocol management, run control, evidence exports, and full audit trail across every scientific vertical.

Ver verticales →
6+
Scientific verticals
100%
Audit trail coverage
12k+
Sessions processed
1
CNB-CSIC institution
Platform preview

See it in action,
before you log in.

Representative views from real analysis runs, rendered from mock data for demonstration. Every pixel you see corresponds to a screen available inside the authenticated workspace.

CTX-2026-BM-0047.czi1280×960 · 16-bit · 3 ch · 31 zz8 / 31
Samples0
Rat primary cortical neurons, confocal z-stack. DAPI, MAP2, Tau channels.
Drop a CZI · ND2 · OME-TIFF to load your own data
50 μm
8 / 31Wikimedia Commons · CC BY-SA · rat primary cortical neurons
x: 1024 y: 768 z: 8/31 intensity: 32,441 AU · CTX-2026-BM-0047

Multi-channel confocal viewer

preview
CZI · ND2 · LIF · OME-TIFF

Z-stack navigation with per-channel LUT controls across DAPI, MAP2 and Tau channels, with automatic QC flagging of out-of-focus acquisition frames. Native monitoring of CZI files from ZEISS LSM 980, preserving pixel intensities for downstream analysis.

$ ngs log--sample CNB-2026-BM-0047 --graph7 commits2 branchese7a4f21Export evidence bundle for grant reviewPI · 2 h ago.pdf1HEAD → mainc1b4a9fMerge analysis/deseq2-v3 into mainMaría R. · 5 h ago.yml2.csv45e2d183Refine threshold: padj < 0.05, |log2FC| > 1María R. · 6 h ago.yml18d912efDESeq2 dispersion estimate convergedMaría R. · 1 d ago.rds1.log1a3f7b2cQC PASS — facility review signedQC bot · 1 d ago.json12f8a561Ingest HeLa_BM_003.czi from Zeiss LSM880Imaging · 2 d ago.czi19b7a4c1Initialize run CNB-2026-BM-0047System · 2 d ago.yml1integritysha-256: 3f9a...c1e4 ✓ chain verifiedlast push2026-04-17 14:22 CET

Science Versioning

preview
Git-based run history · NSVS

Every file, protocol revision, and reviewer signature captured in an immutable commit graph. Branches for parallel analyses, merges on reproduced results.

Differential expression — treated vs. controln = 18,432 genes · DESeq2 · padj < 0.05 · |log₂FC| > 1padj = 0.05IFIT1ISG15OAS2MX1STAT1TP53MYCCCND1log₂ fold change−log₁₀ (padj)-4-20+2+402468up (n = 284)down (n = 197)n.s. (n = 17,951)

RNA-seq Differential

preview
DESeq2 · padj < 0.05 · |log2FC| > 1

Volcano plot with gene-level annotation, hover-locked cards, and click-through to MA plot, dispersion estimate, and expression heatmap.

Protein expression — hierarchical clustering17 proteins · 16 samples · z-score · Ward linkage · 1−ρ distancetreatedcontrolinterferon-stimulated genesGO:0034340 · q = 2.1e−18cell-cycle / proliferationGO:0007049 · q = 4.7e−11IFIT1ISG15OAS2MX1STAT1IFI44IRF7RSAD2IFI6OAS3TP53MYCCCND1MCM2E2F1BRCA1RAD51T1T2T3T4T5T6T7T8C1C2C3C4C5C6C7C8−2z-score+2

Proteomics Heatmap

preview
LC-MS/MS · z-score · hierarchical clustering

Row-and-column dendrograms over z-score-normalised intensities with sample metadata ribbon and STRING-db interaction overlay.

Audit trailrun CNB-2026-BM-0047 · sha-256 chain verified · GDPR article 30 logchain ✓ verifiedISO 27001 readyHASHACTORACTIONARTIFACTSIZETIMEe7a4f21prev: c1b4a9fMLM. LucasPIEXPORTevidence_bundle_0047.pdf4.2 MB14:22c1b4a9fprev: 8d912efMRMaría R.BioinfoAPPROVEprotocol_deseq2_v3.yml11:478d912efprev: a3f7b2cMRMaría R.BioinfoUPDATEanalysis/deseq2/dispersion.rds812 kB10:04a3f7b2cprev: 2f8a561QBQC botQCSIGNqc_report_0047.json24 kB09:112f8a561prev: 9b7a4c1AGA. GarcíaImagingUPLOADHeLa_BM_003.czi3.8 GByesterday9b7a4c1genesisSsystemSystemINITrun_id=CNB-2026-BM-0047yesterday

Audit Trail

preview
GDPR · ISO 27001 · SHA-256 chain

Immutable event log across every ingestion, analysis, and export — cryptographically chained and exportable as PDF evidence bundle.

Science versioning system

Every action,
traced.

Git-based automatic commit trail. Who uploaded what, when, from which instrument. Immutable evidence for grant compliance and regulatory review.

GDPR compliant
ISO 27001 ready
Full audit chain
neogenesis · experiment-cnb-042
$ ngsvs log --branch=main
------------------------------------------
a7f3e21 Microscopy ingest — confocal · 2m ago
2b9d4c8 ROI annotation — user:mlucas · 14m
9e1f85a Protocol v2.1 — peer reviewed · 1h
c1b4a9f QC PASS — facility review · 2d
$ 
Pilot institution
CNB · CSICpilot · 2026
Institutional collaboration

Beyond the pilot,
regional reach.

We're in ongoing conversations with regional science administrations to explore how the platform can support public research ecosystems beyond a single institution.

Focus areas: public-private collaboration models, shared infrastructure, and co-funding pathways for regional research labs.

In conversation
Junta de Extremadura
Regional science administration
Exploratory stage · 2026
Evaluating public-private pathways

Ready to unify your
research data?

Join CNB-CSIC in the pilot. Early access for CSIC research institutes.